Compute mean and standard deviation of normalized counts for each condition

Source: R/utils.R

Compute mean and standard deviation of normalized counts for each condition

getConditionCountStats(count_table, pheno_info,
  condition_col = "condition")

Arguments

count_table

A table of (normalized) sequence counts. A sequence count table can be generated by createCountTableFromFastQs and normalized by applying runDESeq2
pheno_info

A data frame with sample names as row names and one or more condition columns.
condition_col

Name of the column that should be used as the condition to group the samples.

Value

A data frame with sequences as row names and the mean and standard deviation for each condition defined in pheno_info