Compute fraction of reads without BLAST hit for each sample

Source: R/stats.R

Compute fraction of reads without BLAST hit for each sample

getNoBlastHitFraction(summary, count_table)

Arguments

summary

Summary table generated by mergeResults (requires BLAST result generated by runBlast)
count_table

A table of (normalized) sequence counts. A sequence count table can be generated by createCountTableFromFastQs and normalized by applying runDESeq2

Value

A data frame with samples as row names and the column 'NA_fraction'